BtaEX0010018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011458 | CPXM
Description
Bos taurus carboxypeptidase X (M14 family), member 1 (CPXM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001015642]
Coordinates
chr13:52846442-52847862:+
Coord C1 exon
chr13:52846442-52846532
Coord A exon
chr13:52847331-52847419
Coord C2 exon
chr13:52847739-52847862
Length
89 bp
Sequences
Splice sites
3' ss Seq
GTGAATTCATCCTCTACCAGATC
3' ss Score
6.8
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATATGACTGGGTCACTTCATACAAAGTCCAGTTCAGCAATGACAGTCGGACCTGGTGGGGGAGTAAGAATCGCAGCAGCGGGATGGATGCG
Seq A exon
ATCCCAATGGTCTATTCCCTGAGGTTCCCATGCTGGGATCCTCCGACTCACTAGACTTCCGGCATCATGATTATAAAGCCATGAGGAAG
Seq C2 exon
CTGATGAAGCAAGTGAACGAACAGTGCCCCAACATCACCCGCATCTACAGCATCGGGAAGAGCCACCAGGGCTTGAAGCTGTATGTGATGGAAATGTCGGACCAGCCCGGGGAGCATGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011458_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(21.0=100)
A:
PF0024619=Peptidase_M14=PU(2.3=6.7)
C2:
PF0024619=Peptidase_M14=FE(46.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCAATGACAGTCGGACC
R:
GGCTGGTCCGACATTTCCATC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development