RnoEX6019224 @ rn6
Exon Skipping
Gene
ENSRNOG00000021220 | Cpxm1
Description
carboxypeptidase X (M14 family), member 1 [Source:RGD Symbol;Acc:1306937]
Coordinates
chr3:122917436-122918216:-
Coord C1 exon
chr3:122918066-122918216
Coord A exon
chr3:122917882-122917970
Coord C2 exon
chr3:122917436-122917559
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGGAACTCACTTTCCACCAGATC
3' ss Score
7.06
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTATTTCCTGCCAATTCAGACGCGGAGACCCCAGTGCTGAACCTTCTGCCAGAGCCTCAGGTGGCTCGATTCATTCGCCTGCTGCCTCAGACCTGGTTCCAGGGAGGTGCGCCTTGCCTCCGGGCAGAGATCCTGGCCTGTCCAGTCTCAG
Seq A exon
ATCCTAATGACCTGTTCCCTGAGGCCCATACACTAGGATCATCTGACTCTCTGGACTTCCGGCATCACAATTATAAAGCTATGAGGAAG
Seq C2 exon
TTGATGAAAGAGGTGAATGAGCAGTGCCCCAACATCACCCGCATCTACAGCATCGGGAAGAGCCACCAGGGCCTGAAGCTCTATGTGATGGAAATGTCAGACCATCCAGGGGAGCACGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021220-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTGCCAATTCAGACGCG
R:
ATGTTGGGGCACTGCTCATTC
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]