HsaEX6076880 @ hg19
Exon Skipping
Gene
ENSG00000088882 | CPXM1
Description
carboxypeptidase X (M14 family), member 1 [Source:HGNC Symbol;Acc:15771]
Coordinates
chr20:2777173-2777988:-
Coord C1 exon
chr20:2777838-2777988
Coord A exon
chr20:2777652-2777740
Coord C2 exon
chr20:2777173-2777296
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATAAACTCAACCTCCACCAGACC
3' ss Score
3.94
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTATTTCCTGCCAATTCAGACCCAGAAACTCCAGTGCTGAACCTCCTGCCGGAGCCCCAGGTGGCCCGCTTCATTCGCCTGCTGCCCCAGACCTGGCTCCAGGGAGGCGCGCCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCAGTCTCAG
Seq A exon
ACCCCAATGACCTATTCCTTGAGGCCCCTGCGTCGGGATCCTCTGACCCTCTAGACTTTCAGCATCACAATTACAAGGCCATGAGGAAG
Seq C2 exon
CTGATGAAGCAGGTACAAGAGCAATGCCCCAACATCACCCGCATCTACAGCATTGGGAAGAGCTACCAGGGCCTGAAGCTGTATGTGATGGAAATGTCGGACAAGCCTGGGGAGCATGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088882-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=0.065 C2=0.048
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCAGTGCTGAACCTCCT
R:
GTAGATGCGGGTGATGTTGGG
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)