DreEX6059396 @ danRer10
Exon Skipping
Gene
ENSDARG00000098158 | cpxm1b
Description
carboxypeptidase X (M14 family), member 1b [Source:ZFIN;Acc:ZDB-GENE-141212-305]
Coordinates
chr14:51617431-51625607:+
Coord C1 exon
chr14:51617431-51617581
Coord A exon
chr14:51618820-51618908
Coord C2 exon
chr14:51625484-51625607
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTTGTTTTATTTCAGATC
3' ss Score
11.15
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGTTTGAGGGAAACACAGACAGTGAAACGCCAGTGCTAGCGCTTCTGCCTGAGCCGGCGGTGGCACAATACATCCGCATTAACCCACAGAGCTGGTTCAAGAATGGCACCATCTGCCTGAGAGCTGAAATTATGGGATGCGAGCTGCCAG
Seq A exon
ATCCCAACAATATCTACCCATGGCAATCAGAGGACGGCAGCCAAGACAAGCTGGACTTCAGACATCACAACTACAAAGAGATGAGGAAG
Seq C2 exon
CTGATGAAGTCTGTGAACGAGATGTGTCCTGATATCACGCGCATTTACAGCATTGGTAAGAGCTACATGGGCCTGAAGCTGTACGTGATGGAGATCTCAGACAACCCCGGCAAACATGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098158-'5-9,'5-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
ENSDART00000161245fB2069
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACAGTGAAACGCCAGTG
R:
GCGCGTGATATCAGGACACAT
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]