MmuEX6105149 @ mm9
Exon Skipping
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130220046-130220808:-
Coord C1 exon
chr2:130220658-130220808
Coord A exon
chr2:130220473-130220561
Coord C2 exon
chr2:130220046-130220169
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGGAACTCACTTGCCACCAGATC
3' ss Score
5.42
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTATTTCCTGCCAATTCAGACGCAGAGACCCCAGTGTTGAACCTTCTGCCAGAGCCTCAGGTGGCTCGATTCATTCGCCTGCTGCCTCAGACCTGGTTTCAGGGAGGTGCACCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCAGTCTCAG
Seq A exon
ATCCTAATGACCTGTTCCCTGAGGCCCACACACTGGGATCTTCGAACTCTTTGGACTTCCGGCATCACAATTATAAAGCTATGAGAAAG
Seq C2 exon
CTGATGAAACAGGTGAATGAGCAGTGCCCCAACATCACGCGCATCTACAGCATCGGGAAGAGCCACCAGGGTTTGAAGCTGTATGTGATGGAAATGTCAGACCATCCTGGGGAGCATGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
A:
PF0024619=Peptidase_M14=PU(0.6=6.7)
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTCAGACGCAGAGACCCC
R:
GGCACTGCTCATTCACCTGTT
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: