BtaEX0011010 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039014 | DEF8
Description
differentially expressed in FDCP 8 homolog [Source:RefSeq peptide;Acc:NP_001092427]
Coordinates
chr18:14775250-14780359:+
Coord C1 exon
chr18:14775250-14775303
Coord A exon
chr18:14779514-14779635
Coord C2 exon
chr18:14780262-14780359
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCGGCTGTCCGCAGGTG
3' ss Score
11.42
5' ss Seq
AAGGTGGAT
5' ss Score
3.2
Exon sequences
Seq C1 exon
GCTGTAACGAGCCCGGCGGGGCGGCTACAATGTAACCGGGGCGGCGGTGGTCAG
Seq A exon
GTGGGGTGCTATGGAATATGACGAGAAGCTCGCCCGGTTCCGGCAGGTCCATCTCAACCCCTTCAACAAGCAGCAGCATGAGCAGGGGGCTGGCGAGGAGGCCCCGGGCATTACTTCTCAAG
Seq C2 exon
CACGCCTGCCTGAGCTGCCTCCCGGGGAACCAGAGTTCCGCTGCCCAGAGCGTGTGATGGATCTTGGCCTGTCTGAGGACCACTTCGCTCGCCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039014-'1-1,'1-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.579 C2=0.485
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCGGCTACAATGTAAC
R:
GCGAGCGAAGTGGTCCTCA
Band lengths:
130-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development