RnoEX0027056 @ rn6
Exon Skipping
Gene
ENSRNOG00000000264 | Def8
Description
differentially expressed in FDCP 8 homolog [Source:RGD Symbol;Acc:1309008]
Coordinates
chr19:56238408-56245693:+
Coord C1 exon
chr19:56238408-56238508
Coord A exon
chr19:56244088-56244221
Coord C2 exon
chr19:56245596-56245693
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGCCGTGCTGGGCCCTGCAGGTG
3' ss Score
6.98
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCCGGAGGCGGCAGCAGCGGGCGGCGGAGCCGGTACAGTGTAACAGCGGTGGCGAACTACAGTGTAGCCAGCCGGTCCGGTACAATGTAGCGGCAGCCAG
Seq A exon
GTGGGATGCTATGGAGTACGATGAGAAGCTAGTTCGATTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCACCTTGGACCAAGGCATCATGAACAGGAACCCAACGAAAAGGCCCAGGAAGTCACTTCTGAAG
Seq C2 exon
ACACTCTGCCTGAGCTGCCCGCAGGGGAGCCTGAGTTCTGCTACTCCGAGCGCATGATGGATCTTGGCCTGTCTGAGGACCACTTTTCCCGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000264-'0-5,'0-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.595 C2=0.348
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGGTACAGTGTAACAGC
R:
CAGGGCGGGAAAAGTGGTC
Band lengths:
170-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]