MmuEX6039236 @ mm9
Exon Skipping
Gene
ENSMUSG00000001482 | Def8
Description
differentially expressed in FDCP 8 [Source:MGI Symbol;Acc:MGI:1346331]
Coordinates
chr8:125971217-125973298:+
Coord C1 exon
chr8:125971217-125971263
Coord A exon
chr8:125971688-125971812
Coord C2 exon
chr8:125973201-125973298
Length
125 bp
Sequences
Splice sites
3' ss Seq
AGCCGTGCTGGGCCCTGCAGGTG
3' ss Score
6.98
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAACATCTCAAGTAAGGGGACAGGAAGGAAGATCCAGTTCCAAGAG
Seq A exon
GTGGGATGCTATGGAATATGATGAGAAGCTGGTTCGGTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGCTTGGTCCGAGGCATCATGAACAGGAACCCAGTGAGAAGGTCACTTCTGAAG
Seq C2 exon
ACACTTTGCCTGAGCTGCCCGCTGGGGAGCCTGAATTCCACTACTCGGAGCGCATGATGGATCTCGGCCTGTCTGAGGACCACTTTTCCCGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001482-'8-8,'8-6,11-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.558 C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119173=DUF3435=PU(1.0=3.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCTCAAGTAAGGGGACA
R:
CGGGAAAAGTGGTCCTCAGAC
Band lengths:
138-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: