DreEX0026388 @ danRer10
Exon Skipping
Gene
ENSDARG00000068208 | def8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-041114-96]
Coordinates
chr18:31302684-31397922:+
Coord C1 exon
chr18:31302684-31302939
Coord A exon
chr18:31337858-31337977
Coord C2 exon
chr18:31397825-31397922
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTCTGTCTTCTACAGATG
3' ss Score
11.61
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
ACTTCGGTGCAGTGTTTCGAACACTTGCGCTTCTGGATCTCGATAACGAAACGCCAGTTTTGTGACAGCCATCCCTAAATAGTGGAATCCTTAACCTTAGAGGTCCCTATATGACACACCCACCAAGCAATCATCACAACGACTCTGAGCGGCGACTGCGGATCATATATTGAAGGACATGACAGAGGCCTGTTATTAGTTATGATTTATGGTGATAATGAAGAGATGAAGATGCGCTGCTAAGACTGCATAAAGA
Seq A exon
ATGTGACCAGTGTCATGGAATATAATGAAAGACTTGCACGTTTTCGCCAAGGTCACGTCAACCCATTTGACAGGGATGAGATCGACAGCCAAACTGAGGGGAAGGATCCTCCTAAAGATG
Seq C2 exon
GGGTGAAGGCAGAGATCTTCTCTTCTGAAATCAAATCTCAAAATTCAGATCCCCCAATGGATCTGGGCTTGGCTGAAGATCACTTTTCTCGACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068208_MULTIEX1-1/10=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.528 C2=0.758
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTTGCGCTTCTGGATCTC
R:
AGAAGATCTCTGCCTTCACCC
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]