BtaEX0011016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94911066-95055931:-
Coord C1 exon
chr11:95055827-95055931
Coord A exon
chr11:95009929-95009999
Coord C2 exon
chr11:94911066-94911109
Length
71 bp
Sequences
Splice sites
3' ss Seq
ACGGTCTGTTTCTTTTGTAGGCA
3' ss Score
11.1
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGCCGGTCGGCCGGTCGGCCGCAGGCGGGCGGGCAGCGCAGCGCAGCGCCGAGCGGGGCCCGCGGGCCCATGAGGAGGCCGGGGGACCATGGGCTCCAGGATCAA
Seq A exon
GCAAAACCCAGAGACCACCTTTGAAGTGTATGTTGAAGTGGCCTGTCCTAGGACAGGTGGCACTCTTTCAG
Seq C2 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'0-8,'0-4,6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(23.0=93.3)
Main Skipping Isoform:
ENSBTAT00000061512fB2091
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATGGGCTCCAGGATCAA
R:
CTGGTCACTGTAGTCCTCCGG
Band lengths:
65-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development