DreEX6083168 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8334454-8346243:+
Coord C1 exon
chr21:8334454-8334632
Coord A exon
chr21:8338408-8338472
Coord C2 exon
chr21:8346200-8346243
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTATTTACGTTTTAGGGA
3' ss Score
9.67
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACAACTCCCATAACTCCTCAAGACAGTAGTACCGTGATCCGCGCGTGGAGACCATGGCGTTCCTGAGCAGTATGTGACGGGGATAACGGGGAAATATAACTCCGACAGCGGGTTATTCTCACGCTATTCAGAGGAGAGGATTGGATTTAAATAAAGAATAAAATGGGCTCTCGTATCAA
Seq A exon
GGAGAGCCCTGGGTCAGCCTTTGAGGTGTACATGGAGGTGGTGCATTCTGGGACGGCTGGCTCTG
Seq C2 exon
GACTAGAGGTGCGCAGAAGTTTCCCCGACACATACACTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0345613=uDENN=PU(20.3=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTTCCTGAGCAGTATGTG
R:
TGTTCAGTGTATGTGTCGGGG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]