HsaEX0019087 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123792587-123930126:-
Coord C1 exon
chr9:123929889-123930126
Coord A exon
chr9:123878951-123879021
Coord C2 exon
chr9:123792587-123792630
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATGATCTGTTTCTTTTGTAGGCA
3' ss Score
11.17
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ACGCGCGCCGGCGACCATGGCGTTCGCCGGGCTGGAGCGAGTACATTAACCCCTGGAGGCGGCGGCGGCGGCGAGGGAGCGAGCCTCGAGCGGGCGGGCCCCAGCCTGAGGGAAGGGAGGAAGGGGCGGGGAGAGCGCCAGAGGGAGGCCGGTCGGCCGCGGGCGGGCGGGCAGCGCAGCGCCGAGCGGGGCCCGCGGGCCCATGAGGAGGCCTGGGGACCATGGGCTCCAGGATCAA
Seq A exon
GCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAG
Seq C2 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522_MULTIEX3-2/11=C1-3
Average complexity
S
Mappability confidence:
91%=100=91%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.012 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
PF0345613=uDENN=PU(0.1=0.0)
C2:
PF0345613=uDENN=PU(21.1=53.3)
Main Skipping Isoform:
ENST00000373620fB13620
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGAAGGGAGGAAGGG
R:
GTCACTGTAGTCCTCCGGGAA
Band lengths:
174-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development