HsaEX0019087 @ hg19
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:29324]
Coordinates
chr9:126554866-126692386:-
Coord C1 exon
chr9:126692168-126692386
Coord A exon
chr9:126641230-126641300
Coord C2 exon
chr9:126554866-126554909
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATGATCTGTTTCTTTTGTAGGCA
3' ss Score
11.17
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCGTTCGCCGGGCTGGAGCGAGTACATTAACCCCTGGAGGCGGCGGCGGCGGCGAGGGAGCGAGCCTCGAGCGGGCGGGCCCCAGCCTGAGGGAAGGGAGGAAGGGGCGGGGAGAGCGCCAGAGGGAGGCCGGTCGGCCGCGGGCGGGCGGGCAGCGCAGCGCCGAGCGGGGCCCGCGGGCCCATGAGGAGGCCTGGGGACCATGGGCTCCAGGATCAA
Seq A exon
GCAGAATCCAGAGACCACATTTGAAGTATATGTTGAAGTGGCCTATCCCAGGACAGGTGGCACTCTTTCAG
Seq C2 exon
ATCCTGAGGTGCAGAGGCAATTCCCGGAGGACTACAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522-'0-9,'0-4,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.004 C2=0.085
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(14.3=66.7),PF0306810=PAD=PU(8.2=50.0)
A:
PF0345613=uDENN=PU(4.1=14.3)
C2:
PF0345613=uDENN=PU(21.1=53.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGAAGGGAGGAAGGG
R:
GTCACTGTAGTCCTCCGGGAA
Band lengths:
174-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)