BtaEX0011030 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94788569-94874752:-
Coord C1 exon
chr11:94874633-94874752
Coord A exon
chr11:94803007-94803076
Coord C2 exon
chr11:94788569-94788649
Length
70 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTCTTCTTCCCTCAGCTA
3' ss Score
9.42
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTCGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCAAAGAGTTGCTTCTGTATCTTAAG
Seq A exon
CTATCTCCCCTGGTTCGAAGTATTTTATAAGCTACTTAACATCTTGGCAGATTACACGACAAAAGGACAG
Seq C2 exon
GAGAGTCAGTGGAATGAGCTTCTTGAAACTCTGTACAAACTTCCTATCCCTGACCCAGGAGTGTCTGTTCATCTCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610_MULTIEX2-6/7=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(4.9=22.0)
A:
PF0214116=DENN=FE(12.6=100)
C2:
PF0214116=DENN=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAACTTCACATTCGTGC
R:
TGAACAGACACTCCTGGGTCA
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development