DreEX0003543 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8351529-8355177:+
Coord C1 exon
chr21:8351529-8351648
Coord A exon
chr21:8354745-8354814
Coord C2 exon
chr21:8355097-8355177
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTATTTTGATATCAGCTA
3' ss Score
4.08
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TATGGCCGTAGGTCAGGTGGGGCAGAACTTCACGTTTGTTCTAACAGATATCGACAGTAAACAGCGGTTTGGTTTCTGCCGCCTCTCATCAGGAGCTCACAGTTGCCACTGCATTCTCAG
Seq A exon
CTACTTGCCGTGGTTTGAGGTGTTTTACAAGCTGTTGAATATCCTGGCAGACTACACAACCAAAGGACAG
Seq C2 exon
GACATTCAGTGGAGGGAGTTGTTAGAGTCTCTACATGTGTTAAACATCCCTGATCCTGGAGTGCCTGTGCATTTGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-4/18=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(49.2=70.7),PF0214116=DENN=PU(4.4=19.5)
A:
PF0214116=DENN=FE(12.7=100)
C2:
PF0214116=DENN=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCAGAACTTCACGTTTG
R:
GCACTCCAGGATCAGGGATGT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]