RnoEX0027100 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22295407-22381242:-
Coord C1 exon
chr3:22381123-22381242
Coord A exon
chr3:22301387-22301456
Coord C2 exon
chr3:22295407-22295487
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTTCTTCCCCAGCTA
3' ss Score
10.38
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CCTCTCAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTATCTTAAG
Seq A exon
CTACCTCCCCTGGTTTGAGGTATTTTATAAGCTCCTTAACATCTTGGCAGATTACACAACAAAACAACAG
Seq C2 exon
GAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTTCCCATTCCAGACCCCGGAGTGTCTGTTCACCTCAGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(11.0=22.0)
A:
PF0214116=DENN=FE(12.6=100)
C2:
PF0214116=DENN=FE(14.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGAACTTCACATTTGTGC
R:
CGCTGAGGTGAACAGACACTC
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]