GgaEX0001256 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9839465-9862980:-
Coord C1 exon
chr17:9862861-9862980
Coord A exon
chr17:9840664-9840733
Coord C2 exon
chr17:9839465-9839545
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTTTTTTTTAGTTA
3' ss Score
10.1
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CCATGCAGTTAGCCAAGTTGGACAGAACTTTACGTTTGTCCTTACAGACATTGACAGCAAACAGAGGTTTGGGTTCTGTCGCTTATCTTCTGGGGCCAAAAGCTGCTTCTGTATCTTAAG
Seq A exon
TTACCTACCATGGTTTGAAGTCTTTTATAAGCTGCTCAATGTCTTGGCAGATTATTCAGCAAAAGGACAG
Seq C2 exon
GATAATCAAAGGAGTGAGCTTCTGGAAACATTTCATAAACTTAGCATCCCTGAGCCAAAAACTCCCGTTCAGCTTGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'7-18,'7-17,12-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF156511=Tox-SGS=PD(34.6=65.9),PF0345613=uDENN=PD(47.5=70.7)
A:
PF0214116=DENN=FE(12.6=100)
C2:
PF0214116=DENN=FE(14.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTAGCCAAGTTGGACA
R:
GGGAGTTTTTGGCTCAGGGAT
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]