MmuEX6100946 @ mm10
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:38043339-38126648:-
Coord C1 exon
chr2:38126529-38126648
Coord A exon
chr2:38048725-38048794
Coord C2 exon
chr2:38043339-38043419
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTATTTTCCTCAGCTA
3' ss Score
7.92
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CCTCACAGTTAGCCAAGTTGGCCAGAACTTCACATTTGTGCTCACTGACATTGACAGCAAACAGAGATTCGGGTTCTGCCGCTTATCTTCAGGAGCCAAGAGCTGCTTCTGTATCTTAAG
Seq A exon
CTACCTCCCCTGGTTCGAGGTATTCTATAAGCTCCTTAACATCTTGGCAGATTACACGACGAAACGACAG
Seq C2 exon
GAAAGTCAGTGGAATGAACTTCTTGAAACTCTGCACAGACTTCCCATCCCTGATCCTGGAGTGTCTGTTCACCTCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392_MULTIEX2-9/16=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(13.6=22.0)
A:
PF0214116=DENN=FE(12.6=100)
C2:
PF0214116=DENN=FE(14.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGAACTTCACATTTGTGC
R:
ACAGACACTCCAGGATCAGGG
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types