BtaEX0011206 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102117969-102144646:-
Coord C1 exon
chr4:102144590-102144646
Coord A exon
chr4:102134019-102134084
Coord C2 exon
chr4:102117969-102118040
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTGTTTTCCCACAGAAC
3' ss Score
12.59
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATTAATTTCAGATGTAAACCAACATTTCGAGAAGGAGGTTCAAGATCACCAAGAGAA
Seq A exon
AACTTTGTGCGTCACCACTGGGTGCATAGGCGTCGGCAGGAAGGAAAGTGTAAGCAGTGCGGTAAG
Seq C2 exon
GGCTTTCAGCAAAAATTCTCCTTCCACAGTAAAGAGATTGTGGCTATCAGCTGTTCCTGGTGCAAACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.9=26.3)
A:
PF0013017=C1_1=PU(28.3=77.3)
C2:
PF0013017=C1_1=FE(38.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGTAAACCAACATTTCGAGA
R:
CTGTTTGCACCAGGAACAGCT
Band lengths:
119-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development