GgaEX6002530 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59606757-59613049:+
Coord C1 exon
chr1:59606757-59606813
Coord A exon
chr1:59608466-59608531
Coord C2 exon
chr1:59612978-59613049
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTCTTCTCTTGCAGAAC
3' ss Score
13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTAATTTTCGCTGCAAACCAACTTTCCGAGAAGGGAGCTCCAGGTCTCCAAGAGAA
Seq A exon
AACTTTGTCCGACATCACTGGGTACACAGACGGAGGCAGGAGGGGAAATGTAAGCAGTGTGGAAAG
Seq C2 exon
GGCTTTCAGCAGAAATTCTCCTTCCATAGTAAAGAGATTGTGGCCATCAGTTGTTCCTGGTGCAAGCTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.9=26.3)
A:
PF0013017=C1_1=PU(28.3=77.3)
C2:
PF0013017=C1_1=FE(38.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAATTTTCGCTGCAAACCAACT
R:
CCAGCTTGCACCAGGAACAA
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]