RnoEX0027509 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64596782-64628157:-
Coord C1 exon
chr4:64628101-64628157
Coord A exon
chr4:64618977-64619042
Coord C2 exon
chr4:64596782-64596853
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTGTTTCCTTGCAGAAC
3' ss Score
13.63
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATTAATTTCAGATGTAAACCTACATTTCGGGAAGGAGGCTCCAGATCGCCAAGAGAA
Seq A exon
AACTTTGTGCGCCATCACTGGGTCCACAGGAGGCGGCAGGAGGGAAAATGTAAGCAGTGTGGTAAG
Seq C2 exon
GGCTTCCAGCAAAAGTTCTCCTTCCACAGTAAAGAGATCGTGGCCATCAGCTGTTCTTGGTGCAAGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'10-8,'10-6,13-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.223 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.9=26.3)
A:
PF0013017=C1_1=PU(28.3=77.3)
C2:
PF0013017=C1_1=FE(38.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGTAAACCTACATTTCGGGA
R:
CTGCTTGCACCAAGAACAGCT
Band lengths:
119-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]