HsaEX0019449 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137293712-137339534:-
Coord C1 exon
chr7:137339478-137339534
Coord A exon
chr7:137330218-137330283
Coord C2 exon
chr7:137293712-137293810
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTGTTTTCCCACAGAAT
3' ss Score
11.52
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTAATTTCAGATGTAAACCAACATTTCGAGAAGGAGGCTCAAGGTCACCAAGAGAA
Seq A exon
AATTTTGTACGTCATCACTGGGTGCACAGGCGTCGGCAGGAGGGGAAATGTAAGCAGTGTGGTAAG
Seq C2 exon
CAGGAAAACAAAGGTCGTCCTTTTGTGATAAAACCCATCTCTTCTCCTCTCATGAAACCCTTGCTTGTATTTGTGAATCCCAAGAGTGGAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX1-4/11=3-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.098
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.9=26.3)
A:
PF0013017=C1_1=PU(28.3=77.3)
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGATGTAAACCAACATTTCGA
R:
CTGGTTGCCTCCACTCTTGG
Band lengths:
151-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)