HsaEX0019451 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137293712-137308300:-
Coord C1 exon
chr7:137308229-137308300
Coord A exon
chr7:137304570-137304686
Coord C2 exon
chr7:137293712-137293810
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGGCTTATTTTTCTCTTCAGTTT
3' ss Score
8.61
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCTTCCAGCAAAAGTTCTCCTTCCACAGTAAAGAGATTGTGGCTATCAGCTGTTCCTGGTGCAAGCAGGCG
Seq A exon
TTTCACAATAAGGTGACCTGCTTCATGCTGCATCACATTGAAGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGCCCACTTGGATCATTAAGGTGAAGAAACCTCAG
Seq C2 exon
CAGGAAAACAAAGGTCGTCCTTTTGTGATAAAACCCATCTCTTCTCCTCTCATGAAACCCTTGCTTGTATTTGTGAATCCCAAGAGTGGAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX1-6/11=5-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.098
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCAGCAAAAGTTCTCCT
R:
CTGGTTGCCTCCACTCTTGG
Band lengths:
170-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)