RnoEX0027530 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64587414-64619042:-
Coord C1 exon
chr4:64618977-64619042
Coord A exon
chr4:64593401-64593517
Coord C2 exon
chr4:64587414-64587488
Length
117 bp
Sequences
Splice sites
3' ss Seq
TAGCCCGTTTTTCTCTTCAGTTT
3' ss Score
7.5
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AACTTTGTGCGCCATCACTGGGTCCACAGGAGGCGGCAGGAGGGAAAATGTAAGCAGTGTGGTAAG
Seq A exon
TTTCACAATAAAGTGACCTGCTTCATGCTGCATCACATCGAGGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
Seq C2 exon
AACTCCCTGAAGGCTTCCAACCGGAAGAAGAAAAGAACAAGTTTTAAAAGGAAAGCCAGTAAAAGAGGAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.223 A=0.021 C2=0.828
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=77.3)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTGTGCGCCATCACTGG
R:
CTCGGTTCCTCTTTTACTGGCT
Band lengths:
141-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]