BtaEX6028836 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102104166-102118040:-
Coord C1 exon
chr4:102117969-102118040
Coord A exon
chr4:102113905-102114021
Coord C2 exon
chr4:102104166-102104240
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGTTTTTCCCTTCAGTTT
3' ss Score
10.29
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCTTTCAGCAAAAATTCTCCTTCCACAGTAAAGAGATTGTGGCTATCAGCTGTTCCTGGTGCAAACAGGCG
Seq A exon
TTTCACAATAAGGTGACCTGCTTCATGCTGCATCAGATTGAGGAACCCTGCTCCCTGGGGGCTCACGCTGCTGTTATTGTTCCGCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
Seq C2 exon
AACTCCCTGAAGGCATCCAATCGGAAAAAGAAGAGAACAAGCTTTAAAAGGAAAGCCAGCAAAAGAGGAACCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'10-13,'10-10,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.880
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCAGCAAAAATTCTCCTTCCA
R:
TTCGGTTCCTCTTTTGCTGGC
Band lengths:
146-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]