GgaEX6002528 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59612978-59620815:+
Coord C1 exon
chr1:59612978-59613049
Coord A exon
chr1:59613592-59613708
Coord C2 exon
chr1:59620741-59620815
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTTCCTCTCCTCCAGTTT
3' ss Score
10.36
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCTTTCAGCAGAAATTCTCCTTCCATAGTAAAGAGATTGTGGCCATCAGTTGTTCCTGGTGCAAGCTGGCG
Seq A exon
TTTCATAACAAAGTCACCTGCTTCATGCTACATCACATTGAGGAGCCATGTTCTCTGGGGGCTCACGCGGCTGTCATTGTGCCTCCCACCTGGATCATTAAGGTGAAGAAACCTCAG
Seq C2 exon
AACTCATTAAAGACTTCAACACGGCGAAAGAAGAGGACATCTTTTAAAAGAAAAGCCAGCAAAAGAGGCAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'6-8,'6-6,8-8=AN
Average complexity
A_C1
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.813
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
PF0013017=C1_1=PD(28.3=43.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCAGCAGAAATTCTCCTTCC
R:
ATCATTGCCTCTTTTGCTGGCT
Band lengths:
146-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]