BtaEX0011373 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29412692-29416201:-
Coord C1 exon
chr5:29415989-29416201
Coord A exon
chr5:29413229-29413381
Coord C2 exon
chr5:29412692-29412811
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTCCCCTCTTAGAGA
3' ss Score
9.52
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
Exon sequences
Seq C1 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAGAGCTTACAGAACGCTGAGTCCTGGATCAACCGGTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCTACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTATTTGCCAATACTCGAATAG
Seq A exon
AGAATTTCTCTGCTCCCCCTGATGTCACTACAACTACCTCTTCGTCATCATCTTCCTCAATACGCCCAGCAAATATTGATCTACCCCCATCGGGGATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
Seq C2 exon
GTGTTCCTGTCAATAGCAGAGTATCCACAAAAATCCAGCAGCTTCTCAACACTCTGAAACGACCCAAAAGGCCTCCCTTAAAAGAATTTTTTGTGGATGATTCTGAAGAAATTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=1.000 C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGAGGATGAGGGCTCTC
R:
AGAGTGTTGAGAAGCTGCTGG
Band lengths:
256-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development