RnoEX0027959 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141819239-141822647:+
Coord C1 exon
chr7:141819239-141819451
Coord A exon
chr7:141821885-141822034
Coord C2 exon
chr7:141822528-141822647
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCGTCTTTTCCTCTCTTAGAGA
3' ss Score
9.52
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATCCAGGGATCGTCCACTTCTTCATCTGCGTCTTCCACGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCCCTAGCTGATGTATTTGCCAATACTCGAATAG
Seq A exon
AGAATGTCTCTGCTCCTCCTGACGTCACTGCGACTACCTCTTCCTCCTCTTCCTTACTGCGTCCCGCCAACATTGACCTGCCCCCATCCGGCATAGTCAAAGGCATGCACAAAGGCTCCAACAGGTCCAGCCTCATGGACACAGCAGATG
Seq C2 exon
GTGTTCCTGTCAATAGCAGAGTGTCTACAAAAATCCAGCAACTTCTCAACACTCTGAAACGACCCAAAAGACCCCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106_MULTIEX1-2/2=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=1.000 C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAGACGCCAAGCTGC
R:
GGGGTCTTTTGGGTCGTTTCA
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]