HsaEX6066520 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51064969-51069231:+
Coord C1 exon
chr12:51064969-51065181
Coord A exon
chr12:51068257-51068412
Coord C2 exon
chr12:51069112-51069231
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTTTTCTCCTCTCAGAGA
3' ss Score
10.39
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
ACACATCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAGAGCTTACAGAATGCTGAGTCCTGGATCAACCGTTCAATTCAGGGATCGTCCACTTCTTCATCCGCATCTTCTACGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTATTTGCCAATACTCGAATAG
Seq A exon
AGAATTTCTCTGCTCCTCCTGATGTCACTACAACTACCTCTTCCTCCTCATCATCTTCCTCAATTCGCCCAGCAAACATTGACCTGCCCCCCTCGGGGATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
Seq C2 exon
GTGTTCCTGTCAGTAGCAGAGTATCTACAAAAATCCAGCAGCTTCTGAACACTCTGAAACGACCCAAAAGGCCTCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=1.000 C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGAGGATGAGGGCTCTC
R:
AGAGTGTTCAGAAGCTGCTGG
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)