MmuEX6056498 @ mm9
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:99981582-99985587:+
Coord C1 exon
chr15:99981582-99981794
Coord A exon
chr15:99984588-99984737
Coord C2 exon
chr15:99985465-99985587
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTTTTCCTCTCCTAGAAA
3' ss Score
10.23
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCCACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTGTTTGCCAATACTCGAATAG
Seq A exon
AAAATGTCTCTGCTCCTCCCGACGTCACTGCAACTACCTCTTCCTCCTCTTCCTCACTTCGCCCTGCAAACATTGACCTGCCCCCCTCTGGCATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
Seq C2 exon
GTGTTCCTGTCAATAGCAGGGTGTCCACAAAAATTCAGCAGCTTCTCAACACCCTGAAGCGACCCAAAAGACCCCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'8-8,'8-6,9-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=1.000 C2=0.456
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGAGGATGAGGGCTCTC
R:
GGGTGTTGAGAAGCTGCTGAA
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: