GgaEX6046926 @ galGal3
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:149778-153271:-
Coord C1 exon
chrE22C19W28_E50C23:153059-153271
Coord A exon
chrE22C19W28_E50C23:150649-150792
Coord C2 exon
chrE22C19W28_E50C23:149778-149897
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTAATTTTTAGAAA
3' ss Score
10.54
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
ACACGTCTTCCGCATCCGAGGATGAGGGGTCACTAAGGCGTCAAGCTGCTCTTTCTGCTGCATTGCATCAGAGCTTACAGAATGCTGAGTCTTGGATCAACCGATCTATTCAGGGGTCATCCACATCTTCATCAGCATCCTCTACACTTTCCCATGGAGAAGGCAAAGGGACCAGTGGGTCACTAGCTGATGTATTTGCCAATACTCGAATAG
Seq A exon
AAAATTTCTCAGTTCCCCCAGATGTCACAGCAACTACCTCCTCTTCCTCTACACGCCCAGCAGCAATTGACCTTCCTCCTTCAGGGATCGTGAAGGGCATGCACAAGGGATCCAATCGGTCCAGTCTGATGGATACTGCCGATG
Seq C2 exon
GTGTTCCTGTGAGTAGTAGAGTCTCCACAAAGATTCAACAGTTGCTGAACACCTTGAAGAGGCCTAAGAGGCCACCTCTGAAAGAATTTTTTGTGGATGACTTTGAAGAGATTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'5-10,'5-8,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.980 C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGAGGGGTCACTAAGGC
R:
TCAAGGTGTTCAGCAACTGTTGA
Band lengths:
252-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]