RnoEX0027958 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141810404-141822034:+
Coord C1 exon
chr7:141810404-141810529
Coord A exon
chr7:141819239-141819451
Coord C2 exon
chr7:141821885-141822034
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTAATTCCACGCAGACA
3' ss Score
8.29
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATATCCACACGGAAGCAGTCCAAGCTGCTCTGGCGAAACACAAAGAACAGAAAATGGCTTTGCCCATGCCCACCAAGAGGCGGTCCACGTTTGTCCAGTCTCCTGCGGATGCCTGCACACCTCCGG
Seq A exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATCCAGGGATCGTCCACTTCTTCATCTGCGTCTTCCACGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCCCTAGCTGATGTATTTGCCAATACTCGAATAG
Seq C2 exon
AGAATGTCTCTGCTCCTCCTGACGTCACTGCGACTACCTCTTCCTCCTCTTCCTTACTGCGTCCCGCCAACATTGACCTGCCCCCATCCGGCATAGTCAAAGGCATGCACAAAGGCTCCAACAGGTCCAGCCTCATGGACACAGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.944 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.2=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACGGAAGCAGTCC
R:
CATCTGCTGTGTCCATGAGGC
Band lengths:
273-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]