HsaEX0019752 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51053977-51068412:+
Coord C1 exon
chr12:51053977-51054102
Coord A exon
chr12:51064969-51065181
Coord C2 exon
chr12:51068257-51068412
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTAATTCCACACAGACA
3' ss Score
8.09
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATATCCACACAGAAGCAGTTCAGGCTGCACTGGCAAAGCATAAAGAACAGAAGATGGCTTTGCCCATGCCAACCAAAAGGCGATCCACATTTGTTCAGTCTCCTGCAGATGCCTGCACACCTCCTG
Seq A exon
ACACATCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAGAGCTTACAGAATGCTGAGTCCTGGATCAACCGTTCAATTCAGGGATCGTCCACTTCTTCATCCGCATCTTCTACGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTATTTGCCAATACTCGAATAG
Seq C2 exon
AGAATTTCTCTGCTCCTCCTGATGTCACTACAACTACCTCTTCCTCCTCATCATCTTCCTCAATTCGCCCAGCAAACATTGACCTGCCCCCCTCGGGGATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.907 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.0=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACAGAAGCAGTTCAGGC
R:
TCAGCTGTATCCATAAGGCTGG
Band lengths:
276-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)