MmuEX0014710 @ mm9
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:99972453-99984737:+
Coord C1 exon
chr15:99972453-99972578
Coord A exon
chr15:99981582-99981794
Coord C2 exon
chr15:99984588-99984737
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTAATTCCACACAGACA
3' ss Score
8.09
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATATCCACACGGAAGCAGTCCAAGCTGCTCTGGCAAAACACAAAGAACAGAAAATGGCTTTGCCAATGCCCACCAAGAGGCGGTCCACATTTGTCCAGTCTCCTGCGGATGCCTGCACACCTCCGG
Seq A exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCCACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTGTTTGCCAATACTCGAATAG
Seq C2 exon
AAAATGTCTCTGCTCCTCCCGACGTCACTGCAACTACCTCTTCCTCCTCTTCCTCACTTCGCCCTGCAAACATTGACCTGCCCCCCTCTGGCATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.944 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.2=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACGGAAGCAGTCC
R:
TCAGCTGTATCCATAAGGCTGG
Band lengths:
271-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: