BtaEX0011376 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29413229-29426422:-
Coord C1 exon
chr5:29426297-29426422
Coord A exon
chr5:29415989-29416201
Coord C2 exon
chr5:29413229-29413381
Length
213 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTAATTCCACACAGACA
3' ss Score
7.32
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATATCCACACAGAAGCAGTTCAAGCTGCACTGGCAAAGCATAAAGAACAGAAAATGGCTTTGCCCATGCCAACCAAAAGGCGGTCCACATTTGTCCAGTCTCCTGCGGATGCCTGCACACCACCTG
Seq A exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAGAGCTTACAGAACGCTGAGTCCTGGATCAACCGGTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCTACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTATTTGCCAATACTCGAATAG
Seq C2 exon
AGAATTTCTCTGCTCCCCCTGATGTCACTACAACTACCTCTTCGTCATCATCTTCCTCAATACGCCCAGCAAATATTGATCTACCCCCATCGGGGATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.931 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.0=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACAGAAGCAGTTCAAGC
R:
CATCAGCTGTATCCATAAGGCTGG
Band lengths:
276-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development