GgaEX0008727 @ galGal3
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:150649-154624:-
Coord C1 exon
chrE22C19W28_E50C23:154499-154624
Coord A exon
chrE22C19W28_E50C23:153059-153271
Coord C2 exon
chrE22C19W28_E50C23:150649-150792
Length
213 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTGCTTCCACACAGACA
3' ss Score
9.39
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATATCCACACAGAAGCAGTTCAAGCAGCACTGGCAAAACACAAAGAACAGAAAATGGCCCTCCCCATGCCCACAAAACGGCGATCTACATTTGTTCAGTCTCCAGCTGATGCCTGCACTCCTCCAG
Seq A exon
ACACGTCTTCCGCATCCGAGGATGAGGGGTCACTAAGGCGTCAAGCTGCTCTTTCTGCTGCATTGCATCAGAGCTTACAGAATGCTGAGTCTTGGATCAACCGATCTATTCAGGGGTCATCCACATCTTCATCAGCATCCTCTACACTTTCCCATGGAGAAGGCAAAGGGACCAGTGGGTCACTAGCTGATGTATTTGCCAATACTCGAATAG
Seq C2 exon
AAAATTTCTCAGTTCCCCCAGATGTCACAGCAACTACCTCCTCTTCCTCTACACGCCCAGCAGCAATTGACCTTCCTCCTTCAGGGATCGTGAAGGGCATGCACAAGGGATCCAATCGGTCCAGTCTGATGGATACTGCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'4-8,'4-7,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.889 C2=0.980
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(29.4=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACACAGAAGCAGTTCAAGC
R:
CATCGGCAGTATCCATCAGACTG
Band lengths:
268-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]