MmuEX0014710 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100142022-100154306:+
Coord C1 exon
chr15:100142022-100142147
Coord A exon
chr15:100151151-100151363
Coord C2 exon
chr15:100154157-100154306
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTAATTCCACACAGACA
3' ss Score
8.09
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATATCCACACGGAAGCAGTCCAAGCTGCTCTGGCAAAACACAAAGAACAGAAAATGGCTTTGCCAATGCCCACCAAGAGGCGGTCCACATTTGTCCAGTCTCCTGCGGATGCCTGCACACCTCCGG
Seq A exon
ACACGTCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAAAGCTTGCAGAATGCTGAGTCCTGGATCAACCGCTCAATTCAGGGATCGTCCACTTCTTCATCTGCATCTTCCACGCTGTCCCATGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTGTTTGCCAATACTCGAATAG
Seq C2 exon
AAAATGTCTCTGCTCCTCCCGACGTCACTGCAACTACCTCTTCCTCCTCTTCCTCACTTCGCCCTGCAAACATTGACCTGCCCCCCTCTGGCATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.944 C2=1.000
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(25.2=69.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACGGAAGCAGTCC
R:
TCAGCTGTATCCATAAGGCTGG
Band lengths:
271-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types