BtaEX0011379 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006531 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29150]
Coordinates
chr13:47066900-47085917:+
Coord C1 exon
chr13:47066900-47067109
Coord A exon
chr13:47080954-47081088
Coord C2 exon
chr13:47085798-47085917
Length
135 bp
Sequences
Splice sites
3' ss Seq
TACAGTTTGCTTCTTTACAGAAA
3' ss Score
7.34
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATACCTCCTCTGGCTCAGAAGACGAAGGCTCGGTCCAGGGTGACTCGCAGGGGACTCCCACATCCAGCCAGGGCAGCATCAACATGGAGCACTGGATCAGCCAGGCCATCCACGGCTCCACCACCTCCACCACCTCGTCGTCTTCCACCCAGAGTGGGGGCAGCGGTGCTGCCCACAGGCTGGCTGACGTCCTGGCGCAGACACACATAG
Seq A exon
AAAATCACTCTGCACCTCCTGACGTAACCACTTACACCTCAGAACATGCAATACAAGTAGAAAGGCCGCAAGGCTCCACGACGTCGCGGACAGCCCCGAAGTATGGCAATGCCGAGCTCATGGAGACTGGCGATG
Seq C2 exon
GTGTGCCTGTAAGTAGCCGCGTATCTGCAAAGATCCAGCAGCTTGTCAATACCCTCAAACGACCCAAACGACCACCCTTACGGGAATTCTTCGTCGATGACTTTGAAGAACTACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006531_MULTIEX1-6/26=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCTGGCTCAGAAGACGA
R:
ACAAGCTGCTGGATCTTTGCA
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development