DreEX6095474 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27054638-27072569:+
Coord C1 exon
chr24:27054638-27054883
Coord A exon
chr24:27070389-27070523
Coord C2 exon
chr24:27072450-27072569
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTCATCTTCCCAAACCCCAGAGA
3' ss Score
5.17
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GCCTCTCCCCCCTTTCCTCTCTGCCACCCCTGACAGACACCTCGTCCGGCTCGGAGGAGGAGGGCGGCCAGGGTGAGGGAACCCCCACCTCCAGCCAGGGCAGCGTCAGCATGGAGCACTGGATCAGTCGGGCCATCCATCAGGGATCCACCACCTCCTCCTCCTCTTCATCCACACAGAGTGGGGGCAGCGGGGCCGCCGGACGCCTGGCTGACGTTCTGGCTCAAACGCACATGGGCAAATCAG
Seq A exon
AGAATCACTCAGCCCCTCCGGATGTCACCACCTACACCTCCGAACATCCCGTTCAGGTGGAGAGGCCACAGGTGTCCACCGTACCCCGGACAACACCCAAATATGGCAACGCCGAACTCATGGAGACCGGAGACG
Seq C2 exon
GAGTCCCAGTTAGCAGTCGTGTTTCTGCTAAAATCCAGCAACTTGTAAACACATTAAAGCAGCCCAGACGACCTCCGCTTCGAGAGTTTTTTGTTGATGATTTTGAAGAGCTCCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154-'5-9,'5-8,7-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCTCTCTGCCACCCCT
R:
ACACGACTGCTAACTGGGACT
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]