MmuEX6057115 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9535902-9551111:+
Coord C1 exon
chr13:9535902-9536111
Coord A exon
chr13:9549430-9549564
Coord C2 exon
chr13:9550992-9551111
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCCTCTTCTTTACAGAAA
3' ss Score
11.22
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATACCTCTTCCGGTTCAGAAGATGAAGGCTCAGTACAGGGTGATTCCCAGGGAACCCCCACTTCTAGCCAGGGCAGCATCAACATGGAGCATTGGATCAGCCAGGCCATCCATGGCTCTACCACATCAACAACCTCCTCCTCCTCCACGCAGAGTGGGGGCAGTGGGGCAGCACACCGGCTGGCAGATGTCATGGCCCAGACACACATAG
Seq A exon
AAAATCATTCTGCACCTCCTGATGTAACCACCTACACCTCAGAACACTCAATACAAGTGGAAAGGCCGCAGGGCTCCACCACATCCCGGACAGCACCAAAGTATGGCAATGCTGAGCTCATGGAGACTGGGGATG
Seq C2 exon
GTGTACCAGTAAGTAGCCGGGTATCAGCAAAAATTCAGCAGCTTGTCAATACCCTTAAACGACCGAAGCGGCCACCATTACGGGAATTCTTTGTTGATGACTTTGAAGAATTGTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.585
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGCTCAGTACAGGGTGA
R:
CGCTTCGGTCGTTTAAGGGTA
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: