GgaEX6018467 @ galGal3
Exon Skipping
Gene
ENSGALG00000006652 | DIP2C
Description
NA
Coordinates
chr2:9958122-9965777:-
Coord C1 exon
chr2:9965568-9965777
Coord A exon
chr2:9959605-9959736
Coord C2 exon
chr2:9958122-9958241
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTTAACTTGTTTTTCACAGAAA
3' ss Score
8.45
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATACTTCTTCTGGATCAGAAGATGAAGGCTCTGTGCAGGGTGACTCCCAGGGAACTCCTACCTCGAGTCAGGGGAGTATCAACATGGAACATTGGATCAGTCAAGCAATCCATGGCTCTACCACGTCAACCACTTCCTCCTCCTCAACACAAAGTGGAGGCAGTGGAGCTGCACACAGACTAGCTGATGTTATGGCTCAAACACATATAG
Seq A exon
AAAATCATTCTGCCCCTCCAGATGTTACCACTTACACTTCAGAACACTCAATACAAGTAGAAAGGCCACAAGGATCAACGGCACGAGTGGCACCAAAGTATGGAAATGCTGAACTTATGGAAACCGGTGATG
Seq C2 exon
GAGTACCAGTGAGCAGCAGAGTGTCAGCAAAGATTCAGCAGCTGGTCAATACACTAAAACGGCCCAAACGACCACCATTACGAGAGTTCTTTGTAGATGACTTTGAGGAATTGTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006652-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGAACTCCTACCTCGAG
R:
TCGTAATGGTGGTCGTTTGGG
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]