HsaEX6087261 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:461709-468973:-
Coord C1 exon
chr10:468764-468973
Coord A exon
chr10:465005-465139
Coord C2 exon
chr10:461709-461828
Length
135 bp
Sequences
Splice sites
3' ss Seq
CATGATGTGTTTCTTTACAGAAA
3' ss Score
10.23
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATACCTCTTCTGGCTCAGAAGATGAAGGCTCAGTGCAGGGGGACTCCCAGGGCACCCCCACCTCCAGCCAGGGCAGCATCAATATGGAGCACTGGATCAGCCAGGCCATCCACGGCTCCACCACGTCCACCACCTCCTCGTCCTCTACGCAGAGCGGGGGCAGCGGGGCTGCCCACAGGCTGGCGGACGTCATGGCTCAGACCCACATAG
Seq A exon
AAAATCATTCTGCACCTCCTGACGTAACCACGTACACCTCAGAGCACTCGATACAGGTGGAGAGACCGCAGGGTTCCACGGGGTCCCGGACAGCGCCCAAGTACGGCAACGCCGAGCTCATGGAGACCGGGGATG
Seq C2 exon
GAGTACCAGTAAGTAGCCGGGTGTCAGCAAAAATCCAGCAGCTTGTCAATACCCTCAAACGACCGAAACGACCACCTTTACGAGAATTCTTTGTCGATGACTTTGAAGAATTATTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'8-12,'8-9,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGAAGGCTCAGTGCAGG
R:
AGGGTATTGACAAGCTGCTGG
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)