BtaEX0011551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49079657-49082613:-
Coord C1 exon
chr22:49082401-49082613
Coord A exon
chr22:49080701-49080865
Coord C2 exon
chr22:49079657-49079778
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACAGTCCACGCCCTGTCCAGGAG
3' ss Score
5.12
5' ss Seq
GAGGCGAGC
5' ss Score
0.95
Exon sequences
Seq C1 exon
GCTCTGGACAAGATGGAGAAGGAGTGGTCCACCATTCTGTTCAACGTGATGCCCTACAAAGAGACAGACACCTACATCCTCAAGAGCCCAGATGAGGCCTCCCAGCTGCTCGATGACCACATCGTCATGACCCAGAGCATGTCCTTCTCACCCTACAAGAAGCCCTTTGAGCAACGCATCAACTCCTGGGAGACCAAGCTGAAGCTGACGCAG
Seq A exon
GAGGTGCTGGAGGAGTGGCTGAACTGTCAGCGGGCTTGGCTCTACCTGGAGCCCATCTTCAGCTCCGAGGACATCAACCGGCAGCTGCCGGTGGAGAGCAAGCGCTACCAGACCATGGAGCGGATCTGGAGGAAGATCATGAAGAATGCCTACGAGAACCGGGAG
Seq C2 exon
GTGATCAATGTGTGCTCTGACCAGAGGCTGCTGGACAGCCTGCGGGACTGCAACAAGCTGCTGGACATGGTGCAGAAAGGCCTCAGCGAGTACTTGGAGACCAAGCGGAGCGCCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTTCAACGTGATGCCCT
R:
TTTCTGCACCATGTCCAGCAG
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development