MmuEX6040523 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32111233-32113295:-
Coord C1 exon
chr14:32113083-32113295
Coord A exon
chr14:32111784-32111948
Coord C2 exon
chr14:32111233-32111354
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCCCCACTTTCCCAGGAG
3' ss Score
7.71
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCACTAGACAAGATGGAGAAGGAGTGGTCATCCATCCTGTTCAACGTGTTGCCCTACAAGGAGACAGACACCTATATCCTCAAGAGCCCAGACGAAGCCTCACAACTGCTCGACGACCACATCGTCATGACTCAGAGTATGTCCTTCTCACCGTACAAGAAACCCTTTGAGCAGCGCATCAACTCCTGGGAGACCAAACTGAAGCTGACCCAG
Seq A exon
GAGGTGCTGGAGGAGTGGCTGAACTGCCAGCGGGCCTGGCTCTACCTGGAGCCCATCTTCAGCTCTGAGGACATCACCCGGCAGCTGCCTGTGGAGAGCAAGCGCTACCAAACCATGGAGCGCATCTGGAGGAAGATCATGAAGAACGCCTATGAGAACCGGGAG
Seq C2 exon
GTGATCAATGTGTGTTCTGACCAGAGGCTGCTGGACAGCCTGAGGGACTGCAACAAGTTGCTGGACCTGGTACAGAAGGGCCTCAGCGAGTACCTGGAGACCAAGCGGACCGCCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGTGTTGCCCTACAAGGA
R:
ACCAGGTCCAGCAACTTGTTG
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: