GgaEX6009955 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2883698-2886024:+
Coord C1 exon
chr12:2883698-2883910
Coord A exon
chr12:2885072-2885236
Coord C2 exon
chr12:2885903-2886024
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGTCCTATCTTTCCCACTAGGAT
3' ss Score
12.42
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCACTCAACAAGATGGAGAGTGAATGGAGCTCTGTTTCTTTTACTGTTTCGCTTTACAAAGACACGGGTACCTTCATTCTGAAAGACACTGATGAAGCTTCTCAGCTCCTAGATGATCATATTGTCATGACTCAGAGCATGTCCTTCTCACCGTTCAAGAAACACTTTGAGGACAGAATGAACACATGGGAAAACAAGCTGAGGATGACTCAG
Seq A exon
GATGTCCTAGAGGAATGGTTGAACTGCCAGTGCTCTTGGCTCTACCTGGAGCCCATCTTTAGGTCAGAAGACATCAAAAGGCAGCTGCCAGTGGAAAGTGAGCGCTTTCAGGTGGTGGATACAGACTGGAGGATCATCATGAAGAACGCTAACGAAAATCCTGAG
Seq C2 exon
GTGATGTCTTTGTGCCCTGATCCTGCACTGCTAGAAAACCTGCAGAAATGTAACAGATTACTGGAGCTTGTGCAGAAAGGGCTGAGTGAATACCTGGAGACCAAGAGAGGTGCTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'21-24,'21-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTTACAAAGACACGGGT
R:
CACTCAGCCCTTTCTGCACAA
Band lengths:
253-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]