RnoEX6054767 @ rn6
Exon Skipping
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7380925-7382947:-
Coord C1 exon
chr16:7382735-7382947
Coord A exon
chr16:7381469-7381633
Coord C2 exon
chr16:7380925-7381046
Length
165 bp
Sequences
Splice sites
3' ss Seq
GCCCCACCCCTCTTCTCCAGGAG
3' ss Score
9.25
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCACTAGACAAGATGGAGAAGGAATGGGCTTCCATCCTGTTCAACGTGCTGCCCTACAAGGAGACAGACACTTACATCCTCAAGAGCCCAGATGAAGCCTCGCAACTGCTCGATGACCACATCGTCATGACTCAGAGCATGTCTTTTTCACCGTACAAGAAACCCTTTGAGCAGCGCATCAACTCCTGGGAGACCAAACTGAAGCTGACCCAG
Seq A exon
GAGGTGCTAGAGGAGTGGCTGAACTGCCAGAGGTCCTGGCTCTACCTGGAGCCCATCTTCAGTTCTGAGGACATCACCCGGCAGCTGCCCGTGGAGAGCAAGCGCTACCAAACCATGGAGCGGATCTGGAGGAAGATCATGAAGAATGCCTATGAAAACCGGGAG
Seq C2 exon
GTAATCAATGTGTGCTCTGACCAGAGGCTGCTGGACAGCCTCAGGGACTGCAACAAGTTACTGGACCTGGTACAGAAGGGCCTCAGCGAGTACCTGGAGACCAAGCGGACTGCCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914-'33-28,'33-27,34-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
PF083938=DHC_N2=FE(13.1=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACGTGCTGCCCTACAAG
R:
CCCTTCTGTACCAGGTCCAGT
Band lengths:
254-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]