DreEX6092631 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34440298-34441075:-
Coord C1 exon
chr11:34440863-34441075
Coord A exon
chr11:34440504-34440668
Coord C2 exon
chr11:34440298-34440419
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTGTGGCCCTCTGGTGGTAGGAA
3' ss Score
5.99
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GCTCTGAACAAGATGGAGGAAGAATGGTCAACAGTGATGTTTGAGGTGATGCCGTATAAAGAGACAGGAACTTACATACTGAAGAGCCCAGATGAAGCATCTCAGCTCCTAGATGACCACATCGTCATGACCCAGAGCATGGCCTTCTCTCCATATAAAAAACCCTTTGAGGAGAGAATCAGCAAGTGGGAAAGTAAACTGAAAATGACACAG
Seq A exon
GAAGTATTAGAAGAGTGGCTCATCTGTCAGCGGTCGTGGCTGTACATGGAACCCATTTTCAGCTCTGATGACATCAACCGCCAGCTGCCGGTGGAAGGAAAGAGGTATCAAACCATGGAGCGCACCTGGAGGAATATCATGAAGGCCGCCCATGATAACAATCGG
Seq C2 exon
GTGATTGAAGTGTGTCCTGAAGCACGTCTGTTGGCCAGTCTCAAAGACTGTAACAATCTACTGGAGCTTGTGCAGAAAGGACTAAGTGACTACCTGGAAACCAAGCGAAGCGCCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.3=100)
A:
PF083938=DHC_N2=FE(13.4=100)
C2:
PF083938=DHC_N2=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAGCCCAGATGAAGCA
R:
GCTTCGCTTGGTTTCCAGGTA
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]