BtaEX0011560 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30605734-30613129:+
Coord C1 exon
chr4:30605734-30605907
Coord A exon
chr4:30609872-30610076
Coord C2 exon
chr4:30612964-30613129
Length
205 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTTTTTCCCCACCAGAGA
3' ss Score
9.63
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTTTCTGGTTGTCAAGCTGAATTCAGTCAGTGGTGGCATAAAGAGATGAAAGCAGTGAAGTTTCCATCCCAGGGAACAATTTTTGATTATTATCTGGACCACAAAAGTAAGAAGTTTTTGCCTTGGGCTGATAAAATCCCCCAATTTACTATGGATCCAGAAATACCTTTGCAG
Seq A exon
AGAGCTCTGGTTCACACAACAGAGACAACCCGTCTTCGATATTTTGTGGAGTTGCTGCTTGAGAAAGGACAGCCATTGATGCTGGTAGGAAACGCTGGAGTAGGAAAAACAGTCTTTGTAGGTGACATGCTGGCAGGTCTGTCTGAGGCTTATATAGTATCCCGTGTGCCTTTCAACTACTGCACAACATCGGCAGCCCTGCAGC
Seq C2 exon
GAATTCTTGAGAAACCTCTAGAGAAGAAAGCTGGTCGTAACTATGGTCCAGGAGGAAATAAAAAGTTGGTCTATTTTATTGACGACATGAATATGCCTGCAGTGGACTCGTACGGCACTGTCCAGCCCCACACTCTGATTCGACAGCATATTGATTATGGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'56-58,'56-57,57-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.1=100)
C2:
PF127752=AAA_7=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTCAGTCAGTGGTGGCA
R:
GCTGTCGAATCAGAGTGTGGG
Band lengths:
304-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development