RnoEX0028419 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145924032-145931284:-
Coord C1 exon
chr6:145931111-145931284
Coord A exon
chr6:145926937-145927141
Coord C2 exon
chr6:145924032-145924197
Length
205 bp
Sequences
Splice sites
3' ss Seq
CCCTGATTTTTTTCTCCCAGACA
3' ss Score
8.8
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTTTCTGATTACCAAGCCGACTTCAGTAGATGGTGGCATAAGGAAATGAAAGCAGTGAAGTTTCCATCCCAGGGAACCATCTTTGATTATTATCTGGACCACAAAACTAAAAAATTTTTGCCTTGGACTGACAAGGTCCCCCAGTTCACCATGGATGCAGATGCGCCCCTGAAG
Seq A exon
ACAGTCCTGGTACACACACCAGAGACAACTCGTCTTAGGTATTTTACTGAGTTGCTACTTAACAAAGGCAAACCTCTGATGCTGGTTGGAAATGCGGGAGTGGGAAAAACCGTCTTTTTGAGCGACACCCTGGCAAGTATTTCTGAGGACTATATAGTGTCCCGTGTGCCTTTCAACTACTACACGACATCGGCAGACCTGCAGA
Seq C2 exon
GAATTCTTGAAAAACCTCTAGAGAAAAAAGCTGGTCGTAACTATGGTCCAAGAGGAAATAAAAAACTGGTTTACTTCATTGATGATCTGAACATGCCTGAAGTGGATTTGTATGGCACCGTTCAGCCTCATGCACTGCTTCGACAGCATATTGACTATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'60-61,'60-60,62-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.1=100)
C2:
PF127752=AAA_7=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTTCAGTAGATGGTGGC
R:
GAAGCAGTGCATGAGGCTGAA
Band lengths:
299-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]