DreEX6040397 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19476722-19488710:-
Coord C1 exon
chr16:19488537-19488710
Coord A exon
chr16:19483530-19483734
Coord C2 exon
chr16:19476722-19476887
Length
205 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCTTTGTCCACAGGCT
3' ss Score
12.89
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTTCATGACTATCGGGCTGAGTTCAGCCAGTGGTGGATCAAAGAGATGAAGAGTGTGAAGTTTCCTGTCCAGGGCTCTGTGTTTGACTTCTGCTTAGATCCTCACTCCAAACGCTTTGTGCCCTGGACCGACAGGATACCTGCTTTTGAGATGGACCCCGATATACCTGTACAG
Seq A exon
GCTGTGTTAGTGCCTACAGTAGAGACAGTCAGACTGCAGTATTTGATGTCCATGTTGCTGAAGGCGTCTCAGCCGGTCATGCTGGTTGGCGGAGCAGGAACAGGGAAGACCGCCGTCGTCAAGAACCTTCTGGAAACACTACCAGAAAACTTCATAACGACTAAAGTTCCTCTTCATTTCTACACAACTGCGTTAATGCTACAAA
Seq C2 exon
AGGAGATGGAGAAACCCCTGGAGAGGAAGGCTGGCAGGAGCTTCGCACCGCCGAGAAACAAGAGACTGCTCTATTTCATTGATGACATGAACATGGCAGCCGTGGACAGTTATGGGACGTCCCAACCACACGCTCTTATTCGCCAACATCTGGATTATCAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.1=100)
C2:
PF127752=AAA_7=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTTCAGCCAGTGGTGGA
R:
TTGGCGAATAAGAGCGTGTGG
Band lengths:
304-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]